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Instruction for NeSI staff access
See NeSI internal documentation
\uD83D\uDCD8 Instructions for AgR staff access
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While other datasets or projects might be visible, please do not attempt to modify them during this phase of data staging/migration. |
Available Applications
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Modules
module spider to list the available applications as module. See also How to find and load software (aka modules)
Conda
Conda is installed but needs to be enabled:
Run
export PATH=/agr/persist/apps/miniconda/bin:$PATHRun
conda init bashRun
source ~/.bashrcSee also Usage — Bioconda documentation (very important - unless you setup the channel priorities as described there, installations from BioConda won’t work reliably)
Singularity
Available as Apptainer and aliasing enabled, meaning both apptainer --version and singularity --version will work.
Copying data
scp can be used to copy data to/from the login node.
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Login to Inscrutable and then, for example:
copy a file from the user home on the eRI login node to the user home on Inscrutable.
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scp username@agresearch.co.nz@login-0.eri.agresearch.co.nz:/home/agresearch.co.nz/username/slurm-94.out /home/username/slurm-94.out |
Copy from Inscrutable to eRI login node (project folder)
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scp -r /home/username/my-data username@agresearch.co.nz@login-0.eri.agresearch.co.nz:/home/agresearch.co.nz/username/my-dataagr/persist/projects/XXXX-abc_defghijklm |
Copy from NeSI Mahuika to eRI login node
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