Page Comparison

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1. If working from outside the AgResearch local network, connect to AgR VPN
   (or Inscrutable or Iramohio first: e.g. connect via a Terminal application:
   ssh inscrutable.agresearch.co.nz)

2. Once logged on, continue to connect to an eRI login node:
   ssh username@agresearch.co.nz@login-0.eri.agresearch.co.nz
   (or login-1) enter your password if prompted

3. List the contents of your sandbox project folder:
   ls -la /agr/persist/projects/XXXX-abc_defghijklm

4. List the contents of your scratch folder:
   ls -la /agr/scratch/projects/XXXX-abc_defghijklm

5. Change into the scratch location:
   cd /agr/scratch/projects/XXXX-abc_defghijklm

6. Run export PATH=/agr/persist/apps/miniconda/bin:$PATH

7. Run conda init bash

8. Run source ~/.bashrc

9. Start working…

Installed Applications

Modules

module spider to list the available applications as module.

Conda

Conda is installed but needs to be enabled:

1. Run export PATH=/agr/persist/apps/miniconda/bin:$PATH

2. Run conda init bash

3. Run source ~/.bashrc

Singularity

Available as Apptainer and aliasing enabled, meaning both apptainer --version and singularity --version will work.

Copying data

scp can be used to copy data to/from the login node.

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